PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000176447
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 375aa    MW: 42867.6 Da    PI: 5.008
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000176447genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.44e-5581371129
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL++     ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v+
  MDP0000176447   8 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQErcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVY 102
                    69****************************.9***************953432233667************************************* PP

            NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                    + k +l+g++ktLvfykgrap+g+k+dW+mheyrle
  MDP0000176447 103 D-KAKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137
                    *.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-576146IPR003441NAC domain
PROSITE profilePS5100557.1368188IPR003441NAC domain
PfamPF023658.9E-299136IPR003441NAC domain
SuperFamilySSF1019412.62E-57176188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MESIESTVPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI RDIDLYRIEP WDLQERCRIG  60
YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKS VYDKAKLIGM RKTLVFYKGR  120
APNGQKSDWI MHEYRLESDE NGPPQASDQN SSSSSSLSTH THTHTHRIST LVKFLQEEGW  180
VVCRAFKKRT SSQNKSIEGW DSSYFYEELN GLTSVADPTN YMISRQPQSF LSQNFMCKQE  240
TEADSLNFLH SDPFVQLPQL ESPSLPLIKR PSSTSLISEN NIEIEDQQSI RGCNDAKKVT  300
DWRALDKFVA SQLSQEERYE GDGGASFGAN DESDMALLLL QSSSARDEDD QLGNKLNGFL  360
NSTTDCDIGI CIFEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-50513612140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008360575.10.0PREDICTED: NAC domain-containing protein 7-like
RefseqXP_008360576.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9SL411e-155NAC37_ARATH; NAC domain-containing protein 37
TrEMBLD9ZJ950.0D9ZJ95_MALDO; NAC domain class transcription factor
STRINGVIT_04s0023g03110.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45653459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-144vascular related NAC-domain protein 1